latch.verified package#
Submodules#
latch.verified.deseq2 module#
latch.verified.mafft module#
latch.verified.pathway module#
latch.verified.rnaseq module#
- class latch.verified.rnaseq.SingleEndReads(r1: latch.types.file.LatchFile)[source]#
Bases:
object
- classmethod from_dict(kvs: Optional[Union[dict, list, str, int, float, bool]], *, infer_missing=False) dataclasses_json.api.A #
- classmethod from_json(s: Union[str, bytes, bytearray], *, parse_float=None, parse_int=None, parse_constant=None, infer_missing=False, **kw) dataclasses_json.api.A #
- class latch.verified.rnaseq.PairedEndReads(r1: latch.types.file.LatchFile, r2: latch.types.file.LatchFile)[source]#
Bases:
object
- classmethod from_dict(kvs: Optional[Union[dict, list, str, int, float, bool]], *, infer_missing=False) dataclasses_json.api.A #
- classmethod from_json(s: Union[str, bytes, bytearray], *, parse_float=None, parse_int=None, parse_constant=None, infer_missing=False, **kw) dataclasses_json.api.A #
- class latch.verified.rnaseq.ReadType(value)[source]#
Bases:
enum.Enum
An enumeration.
- single = 'single'#
- paired = 'paired'#
- class latch.verified.rnaseq.Strandedness(value)[source]#
Bases:
enum.Enum
An enumeration.
- auto = 'auto'#
- class latch.verified.rnaseq.Sample(name: str, strandedness: latch.verified.rnaseq.Strandedness, replicates: List[Union[latch.verified.rnaseq.SingleEndReads, latch.verified.rnaseq.PairedEndReads]])[source]#
Bases:
object
- strandedness: latch.verified.rnaseq.Strandedness#
- replicates: List[Union[latch.verified.rnaseq.SingleEndReads, latch.verified.rnaseq.PairedEndReads]]#
- classmethod from_dict(kvs: Optional[Union[dict, list, str, int, float, bool]], *, infer_missing=False) dataclasses_json.api.A #
- classmethod from_json(s: Union[str, bytes, bytearray], *, parse_float=None, parse_int=None, parse_constant=None, infer_missing=False, **kw) dataclasses_json.api.A #
- class latch.verified.rnaseq.LatchGenome(value)[source]#
Bases:
enum.Enum
An enumeration.
- RefSeq_hg38_p14 = 'Homo sapiens (RefSeq hg38.p14)'#
- RefSeq_T2T_CHM13v2_0 = 'Homo sapiens (RefSeq T2T-CHM13v2.0)'#
- RefSeq_R64 = 'Saccharomyces cerevisiae (RefSeq R64)'#
- RefSeq_GRCm39 = 'Mus musculus (RefSeq GRCm39)'#