Workflow Examples

Latch Verified features list of well-curated workflows developed by the Latch team.

• Bulk RNA-seq

• Differential Expression

• Pathway Analysis

We’ll maintain a growing list of well documented examples developed by our community members here. Please open a pull request to feature your own:

Gene Editing

• Guide Counter

• Batch-GE: Gene editing analysis

Phylogenetics

• Seq-to-tree: Evolutionary history inference

• Codon optimization estimation

• Metamage: Taxonomy classification

Single-cell Analysis

• ArchR: Single-cell chromatin accessibility analysis

• emptydropsR: Ambient RNA detection

• scVelo: Single-cell RNA velocity analysis

Protein Engineering

• UniRep: mLSTM “babbler” deep representation learner for protein engineering

• FAMSA: Multiple sequence protein alignment

Nextflow

• A Nextflow workflow to process FastQs