Index A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W A access_token_request() (latch_cli.auth.oauth2.OAuth2 method) Account (class in latch.account) account (latch.account.AccountUpdate attribute) accountId (latch_cli.services.cp.utils.Team attribute) AccountInfoCurrent (class in latch_cli.services.cp.utils) AccountUpdate (class in latch.account) AdapterSequence (class in latch.verified.trim_galore) AlignmentMode (class in latch.verified.mafft) AlignmentTools (class in latch.verified.rnaseq) allow_custom (latch.types.metadata.Multiselect attribute) allow_dir (latch.types.metadata.LatchParameter attribute) allow_file (latch.types.metadata.LatchParameter attribute) allowEmpty (latch.registry.upstream_types.types.DBType attribute) AnsiCodes (class in latch_cli.click_utils) appearance_type (latch.types.metadata.LatchParameter attribute) append_domain() (in module latch_cli.utils.path) append_scheme() (in module latch_cli.utils.path) arr_index (latch.executions.TaskIdentifier attribute) arr_retry (latch.executions.TaskIdentifier attribute) array (latch.registry.upstream_types.types.ArrayType attribute) ArrayType (class in latch.registry.upstream_types.types) AuthenticationError author (latch.types.metadata.LatchMetadata attribute) authorization_request() (latch_cli.auth.oauth2.OAuth2 method) authz_server_host (latch_cli.constants.OAuth2Constants attribute) auto (latch.verified.mafft.AlignmentMode attribute) (latch.verified.rnaseq.Strandedness attribute) (latch.verified.trim_galore.AdapterSequence attribute) B base_image (latch_cli.constants.LatchConstants attribute) (latch_cli.workflow_config.LatchWorkflowConfig attribute) BaseImageOptions (class in latch_cli.workflow_config) BaseQualityEncoding (class in latch.verified.trim_galore) batch_table_column (latch.types.metadata.LatchParameter attribute) best_effort_display_name() (in module latch_cli.utils) BlobValue (class in latch.registry.upstream_types.values) bold (latch_cli.click_utils.AnsiCodes attribute) bold() (in module latch_cli.click_utils) Bucket (class in latch_cli.services.cp.utils) bucketName (latch_cli.services.cp.utils.Bucket attribute) buffered_print() (in module latch_cli.menus) build_image() (in module latch_cli.services.register.utils) build_random_string() (in module latch_cli.centromere.utils) C centromere_keepalive_interval (latch_cli.constants.LatchConstants attribute) centromere_poll_timeout (latch_cli.constants.LatchConstants attribute) challenge_method (latch_cli.auth.pkce.PKCE attribute) check_exists_and_rename() (in module latch_cli.utils) check_src() (in module latch_cli.services.sync) Child (class in latch_cli.services.cp.utils) child (latch.types.directory.IterdirChildLdataTreeEdge attribute) (latch_cli.services.cp.utils.ChildLdataTreeEdgesNode attribute) ChildLdataTreeEdges (class in latch_cli.services.cp.utils) childLdataTreeEdges (latch.types.directory.IterDirLDataResolvePathFinalLinkTarget attribute) (latch_cli.services.cp.utils.LdataResolvePathData attribute) ChildLdataTreeEdgesNode (class in latch_cli.services.cp.utils) cleanup() (latch_cli.centromere.utils.MaybeRemoteDir method) (latch_cli.utils.TemporarySSHCredentials method) clear() (in module latch_cli.menus) (latch.account.AccountUpdate method) (latch.registry.project.ProjectUpdate method) (latch.registry.table.TableUpdate method) clear_screen() (in module latch_cli.menus) client_id (latch_cli.constants.OAuth2Constants attribute) color (latch_cli.click_utils.AnsiCodes attribute) color() (in module latch_cli.click_utils) colored_exception_show() (in module latch_cli.click_utils) colored_usage_error_show() (in module latch_cli.click_utils) ColoredHelpFormatter (class in latch_cli.click_utils) Column (class in latch.registry.types) combine() (in module latch.functions.operators) commands (latch_cli.docker_utils.DockerCmdBlock attribute) comment (latch.types.metadata.LatchParameter attribute) (latch_cli.docker_utils.DockerCmdBlock attribute) commit() (latch.account.AccountUpdate method) (latch.registry.project.ProjectUpdate method) (latch.registry.table.TableUpdate method) complete() (in module latch_cli.services.cp.autocomplete) config (latch.types.metadata.SnakemakeFileMetadata attribute) (latch.types.metadata.SnakemakeFileParameter attribute) construct_challenge() (latch_cli.auth.pkce.PKCE method) container_args (latch.types.metadata.EnvironmentConfig attribute) content (latch_cli.tinyrequests.TinyResponse property) convert() (latch_cli.click_utils.EnumChoice method) cores (latch.types.metadata.SnakemakeMetadata attribute) cp() (in module latch_cli.services.cp.main) CrashHandler (class in latch_cli.exceptions.handler) create() (latch_cli.centromere.utils.MaybeRemoteDir method) create_and_write_config() (in module latch_cli.workflow_config) create_conditional_section() (in module latch.resources.conditional) CSRFState (class in latch_cli.auth.csrf) cuda (latch_cli.workflow_config.BaseImageOptions attribute) current() (latch.account.Account class method) current_cursor_position() (in module latch_cli.menus) custom_memory_optimized_task() (in module latch.resources.tasks) custom_task() (in module latch.resources.tasks) D date (latch_cli.workflow_config.LatchWorkflowConfig attribute) DBType (class in latch.registry.upstream_types.types) default (latch.types.metadata.SnakemakeParameter attribute) (latch_cli.workflow_config.BaseImageOptions attribute) defaultAccount (latch_cli.services.cp.utils.UserInfoByAccountId attribute) delete_record() (latch.registry.table.TableUpdate method) delete_registry_project() (latch.account.AccountUpdate method) delete_table() (latch.registry.project.ProjectUpdate method) descendants (latch.types.directory.NodeDescendantsFinalLinkTarget attribute) description (latch.types.metadata.LatchParameter attribute) detail (latch.types.metadata.LatchParameter attribute) dict (latch.types.metadata.LatchMetadata property) (latch.types.metadata.LatchParameter property) (latch.types.metadata.LatchRule property) display_name (latch.types.metadata.Fork attribute) (latch.types.metadata.ForkBranch attribute) (latch.types.metadata.LatchMetadata attribute) (latch.types.metadata.LatchParameter attribute) (latch_cli.menus.SelectOption attribute) docker_metadata (latch.types.metadata.SnakemakeMetadata attribute) DockerBuildLogItem (class in latch_cli.services.register.utils) DockerCmdBlock (class in latch_cli.docker_utils) DockerCmdBlockOrder (class in latch_cli.docker_utils) DockerMetadata (class in latch.types.metadata) documentation (latch.types.metadata.LatchMetadata attribute) download (latch.types.metadata.SnakemakeFileMetadata attribute) (latch.types.metadata.SnakemakeFileParameter attribute) draw_box() (in module latch_cli.menus) draw_horizontal_line() (in module latch_cli.menus) draw_vertical_line() (in module latch_cli.menus) E email (latch.types.metadata.LatchAuthor attribute) EmptyCell (class in latch.registry.upstream_types.values) EnumChoice (class in latch_cli.click_utils) env_config (latch.types.metadata.SnakemakeMetadata attribute) EnvironmentConfig (class in latch.types.metadata) error (latch_cli.services.register.utils.DockerBuildLogItem attribute) expand_pattern() (in module latch_cli.services.cp.glob) experimentId (latch.registry.upstream_types.types.PrimitiveTypeLink attribute) F fftns2 (latch.verified.mafft.AlignmentMode attribute) file_chunk_size (latch_cli.constants.LatchConstants attribute) file_glob() (in module latch.types.glob) file_max_size (latch_cli.constants.LatchConstants attribute) file_metadata (latch.types.metadata.SnakemakeMetadata attribute) finalLinkTarget (latch.types.directory.IterdirLdataResolvePathData attribute) (latch.types.directory.NodeDescendantsLDataResolvePathData attribute) flow (latch.types.metadata.ForkBranch attribute) (latch.types.metadata.LatchMetadata attribute) (latch.types.metadata.Section attribute) (latch.types.metadata.Spoiler attribute) FlowBase (class in latch.types.metadata) flows (latch.types.metadata.Fork attribute) Fork (class in latch.types.metadata) fork (latch.types.metadata.Fork attribute) ForkBranch (class in latch.types.metadata) format_epilog() (latch_cli.click_utils.LatchCommand method) format_path() (in module latch.types.utils) from_dict() (latch.verified.rnaseq.PairedEndReads class method) (latch.verified.rnaseq.Sample class method) (latch.verified.rnaseq.SingleEndReads class method) from_json() (latch.verified.rnaseq.PairedEndReads class method) (latch.verified.rnaseq.Sample class method) (latch.verified.rnaseq.SingleEndReads class method) full_reset (latch_cli.click_utils.AnsiCodes attribute) G GB (latch_cli.constants.Units attribute) generate() (latch_cli.utils.TemporarySSHCredentials method) generate_dockerfile() (in module latch_cli.docker_utils) generate_temporary_ssh_credentials() (in module latch_cli.utils) get() (in module latch_cli.tinyrequests) get_auth_header() (in module latch_cli.utils) get_blob_nodetype() (in module latch.registry.utils) get_columns() (latch.registry.record.Record method) (latch.registry.table.Table method) get_dataframe() (latch.registry.table.Table method) get_default_dockerfile() (in module latch_cli.docker_utils) get_display_name() (latch.registry.project.Project method) (latch.registry.table.Table method) get_epilogue() (in module latch_cli.docker_utils) get_executions() (in module latch_cli.services.get_executions) get_latest_package_version() (in module latch_cli.utils) get_latest_package_version_request() (in module latch_cli.utils) get_local_package_version() (in module latch_cli.utils) get_name() (latch.registry.record.Record method) get_name_from_path() (in module latch_cli.utils.path) get_parameter_json_value() (in module latch_cli.utils) get_params() (in module latch_cli.services.get_params) get_path_error() (in module latch_cli.utils.path) get_project_id() (latch.registry.table.Table method) get_prologue() (in module latch_cli.docker_utils) get_secret() (in module latch.functions.secrets) get_table_id() (latch.registry.record.Record method) get_task_identifier() (in module latch.executions) get_values() (latch.registry.record.Record method) get_wf() (in module latch_cli.services.get) GiB (latch_cli.constants.Units attribute) github (latch.types.metadata.LatchAuthor attribute) group_tuple() (in module latch.functions.operators) H hash_directory() (in module latch_cli.utils) headers (latch_cli.tinyrequests.TinyResponse property) hidden (latch.types.metadata.LatchParameter attribute) human_readable_time() (in module latch_cli.utils) I id (latch.account.Account attribute) (latch.registry.project.Project attribute) (latch.registry.record.Record attribute) (latch.registry.table.Table attribute) identifier_from_str() (in module latch_cli.utils) identifier_suffix_from_str() (in module latch_cli.utils) ignore_regex (latch_cli.constants.LatchConstants attribute) illumina (latch.verified.trim_galore.AdapterSequence attribute) import_module_by_path() (in module latch_cli.services.register.utils) infer_commands() (in module latch_cli.docker_utils) init() (in module latch_cli.services.init.init) (latch_cli.exceptions.handler.CrashHandler method) inner_join() (in module latch.functions.operators) invalid_type (latch.registry.table.InvalidColumnTypeError attribute) InvalidColumnTypeError InvalidValue (class in latch.registry.types) (class in latch.registry.upstream_types.values) ip (latch_cli.centromere.utils.RemoteConnInfo attribute) is_account_relative() (in module latch_cli.utils.path) is_remote_path() (in module latch_cli.utils.path) is_valid_url() (in module latch.types.utils) iter_content() (latch_cli.tinyrequests.TinyResponse method) iterdir() (latch.types.directory.LatchDir method) IterdirChild (class in latch.types.directory) IterdirChildLdataTreeEdge (class in latch.types.directory) IterdirChildLdataTreeEdges (class in latch.types.directory) IterdirLdataResolvePathData (class in latch.types.directory) IterDirLDataResolvePathFinalLinkTarget (class in latch.types.directory) J json() (latch_cli.tinyrequests.TinyResponse method) JsonArray (in module latch.types.json) JsonObject (in module latch.types.json) JsonValue (in module latch.types.json) jump_host (latch_cli.constants.LatchConstants attribute) jump_key_path (latch_cli.centromere.utils.RemoteConnInfo attribute) jump_user (latch_cli.constants.LatchConstants attribute) K kB (latch_cli.constants.Units attribute) key (latch.registry.record.NoSuchColumnError attribute) (latch.registry.table.InvalidColumnTypeError attribute) (latch.registry.types.Column attribute) KiB (latch_cli.constants.Units attribute) L large_gpu_task (latch_cli.services.local_dev.TaskSize attribute) large_gpu_task() (in module latch.resources.tasks) large_task (latch_cli.services.local_dev.TaskSize attribute) large_task() (in module latch.resources.tasks) latch module latch.account module latch.executions module latch.functions module latch.functions.messages module latch.functions.operators module latch.functions.secrets module latch.registry module latch.registry.project module latch.registry.record module latch.registry.table module latch.registry.types module latch.registry.upstream_types module latch.registry.upstream_types.types module latch.registry.upstream_types.values module latch.registry.utils module latch.resources module latch.resources.conditional module latch.resources.launch_plan module latch.resources.map_tasks module latch.resources.reference_workflow module latch.resources.tasks module latch.resources.workflow module latch.types module latch.types.directory module latch.types.file module latch.types.glob module latch.types.json module latch.types.metadata module latch.types.utils module latch.verified module latch.verified.deseq2 module latch.verified.mafft module latch.verified.pathway module latch.verified.rnaseq module latch.verified.trim_galore module latch_cli module latch_cli.auth module latch_cli.auth.csrf module latch_cli.auth.oauth2 module latch_cli.auth.pkce module latch_cli.auth.utils module latch_cli.centromere module latch_cli.centromere.ctx module latch_cli.centromere.utils module latch_cli.click_utils module latch_cli.constants module latch_cli.docker_utils module latch_cli.exceptions module latch_cli.exceptions.cache module latch_cli.exceptions.errors module latch_cli.exceptions.handler module latch_cli.exceptions.traceback module latch_cli.main module latch_cli.menus module latch_cli.services module latch_cli.services.cp module latch_cli.services.cp.autocomplete module latch_cli.services.cp.glob module latch_cli.services.cp.main module latch_cli.services.cp.utils module latch_cli.services.deprecated module latch_cli.services.execute module latch_cli.services.get module latch_cli.services.get_executions module latch_cli.services.get_params module latch_cli.services.init module latch_cli.services.init.init module latch_cli.services.launch module latch_cli.services.local_dev module latch_cli.services.local_dev_old module latch_cli.services.login module latch_cli.services.ls module latch_cli.services.move module latch_cli.services.preview module latch_cli.services.register module latch_cli.services.register.constants module latch_cli.services.register.register module latch_cli.services.register.utils module latch_cli.services.stop_pod module latch_cli.services.sync module latch_cli.services.test_data module latch_cli.services.test_data.ls module latch_cli.services.test_data.remove module latch_cli.services.test_data.upload module latch_cli.services.test_data.utils module latch_cli.services.workspace module latch_cli.tinyrequests module latch_cli.tui module latch_cli.utils module latch_cli.utils.path module latch_cli.workflow_config module latch_filter() (in module latch.functions.operators) latch_version (latch_cli.workflow_config.LatchWorkflowConfig attribute) LatchAppearanceEnum (class in latch.types.metadata) LatchAppearanceType (in module latch.types.metadata) LatchAuthor (class in latch.types.metadata) latchbiosdk (latch_cli.utils.WorkflowType attribute) LatchCommand (class in latch_cli.click_utils) LatchConstants (class in latch_cli.constants) LatchDir (class in latch.types.directory) LatchDirPathTransformer (class in latch.types.directory) LatchFile (class in latch.types.file) LatchFilePathTransformer (class in latch.types.file) LatchGenome (class in latch.verified.rnaseq) LatchGroup (class in latch_cli.click_utils) LatchMetadata (class in latch.types.metadata) LatchOutputDir (in module latch.types.directory) LatchOutputFile (in module latch.types.file) LatchParameter (class in latch.types.metadata) LatchRule (class in latch.types.metadata) LatchWorkflowConfig (class in latch_cli.workflow_config) launch() (in module latch_cli.services.launch) LaunchPlan (class in latch.resources.launch_plan) ldataNodeId (latch.registry.upstream_types.values.BlobValue attribute) LdataResolvePathData (class in latch_cli.services.cp.utils) LdataS3MountAccessProvensByGeneratedUsing (class in latch_cli.services.cp.utils) ldataS3MountAccessProvensByGeneratedUsing (latch_cli.services.cp.utils.LdataS3MountConfiguratorRolesByAccountIdNode attribute) LdataS3MountConfiguratorRolesByAccountId (class in latch_cli.services.cp.utils) ldataS3MountConfiguratorRolesByAccountId (latch_cli.services.cp.utils.AccountInfoCurrent attribute) LdataS3MountConfiguratorRolesByAccountIdNode (class in latch_cli.services.cp.utils) left_join() (in module latch.functions.operators) license (latch.types.metadata.LatchMetadata attribute) line (latch.types.metadata.LatchAppearanceEnum attribute) line_down() (in module latch_cli.menus) line_up() (in module latch_cli.menus) LinkedRecordType (class in latch.registry.types) LinkValue (class in latch.registry.upstream_types.values) linsi (latch.verified.mafft.AlignmentMode attribute) list_records() (latch.registry.table.Table method) list_registry_projects() (latch.account.Account method) list_tables() (latch.registry.project.Project method) load() (latch.account.Account method) (latch.registry.project.Project method) (latch.registry.record.Record method) (latch.registry.table.Table method) local_development() (in module latch_cli.services.local_dev) (in module latch_cli.services.local_dev_old) local_path (latch.types.directory.LatchDir property) (latch.types.file.LatchFile property) login() (in module latch_cli.services.login) ls() (in module latch_cli.services.ls) (in module latch_cli.services.test_data.ls) M maximum_upload_parts (latch_cli.constants.LatchConstants attribute) maximum_upload_size (latch_cli.constants.LatchConstants attribute) MaybeRemoteDir (class in latch_cli.centromere.utils) MB (latch_cli.constants.Units attribute) medium_task (latch_cli.services.local_dev.TaskSize attribute) medium_task() (in module latch.resources.tasks) members (latch.registry.upstream_types.types.PrimitiveTypeEnum attribute) message (latch.types.metadata.LatchRule attribute) (latch_cli.services.register.utils.DockerBuildLogItem attribute) message() (in module latch.functions.messages) metadata (latch.registry.upstream_types.types.PrimitiveTypeBasic attribute) (latch.registry.upstream_types.types.PrimitiveTypeEnum attribute) (latch.registry.upstream_types.types.PrimitiveTypeLink attribute) MiB (latch_cli.constants.Units attribute) module latch latch.account latch.executions latch.functions latch.functions.messages latch.functions.operators latch.functions.secrets latch.registry latch.registry.project latch.registry.record latch.registry.table latch.registry.types latch.registry.upstream_types latch.registry.upstream_types.types latch.registry.upstream_types.values latch.registry.utils latch.resources latch.resources.conditional latch.resources.launch_plan latch.resources.map_tasks latch.resources.reference_workflow latch.resources.tasks latch.resources.workflow latch.types latch.types.directory latch.types.file latch.types.glob latch.types.json latch.types.metadata latch.types.utils latch.verified latch.verified.deseq2 latch.verified.mafft latch.verified.pathway latch.verified.rnaseq latch.verified.trim_galore latch_cli latch_cli.auth latch_cli.auth.csrf latch_cli.auth.oauth2 latch_cli.auth.pkce latch_cli.auth.utils latch_cli.centromere latch_cli.centromere.ctx latch_cli.centromere.utils latch_cli.click_utils latch_cli.constants latch_cli.docker_utils latch_cli.exceptions latch_cli.exceptions.cache latch_cli.exceptions.errors latch_cli.exceptions.handler latch_cli.exceptions.traceback latch_cli.main latch_cli.menus latch_cli.services latch_cli.services.cp latch_cli.services.cp.autocomplete latch_cli.services.cp.glob latch_cli.services.cp.main latch_cli.services.cp.utils latch_cli.services.deprecated latch_cli.services.execute latch_cli.services.get latch_cli.services.get_executions latch_cli.services.get_params latch_cli.services.init latch_cli.services.init.init latch_cli.services.launch latch_cli.services.local_dev latch_cli.services.local_dev_old latch_cli.services.login latch_cli.services.ls latch_cli.services.move latch_cli.services.preview latch_cli.services.register latch_cli.services.register.constants latch_cli.services.register.register latch_cli.services.register.utils latch_cli.services.stop_pod latch_cli.services.sync latch_cli.services.test_data latch_cli.services.test_data.ls latch_cli.services.test_data.remove latch_cli.services.test_data.upload latch_cli.services.test_data.utils latch_cli.services.workspace latch_cli.tinyrequests latch_cli.tui latch_cli.utils latch_cli.utils.path latch_cli.workflow_config move() (in module latch_cli.services.move) move_cursor() (in module latch_cli.menus) move_cursor_down() (in module latch_cli.menus) move_cursor_left() (in module latch_cli.menus) move_cursor_right() (in module latch_cli.menus) move_cursor_up() (in module latch_cli.menus) Multiselect (class in latch.types.metadata) MultiselectOption (class in latch.types.metadata) N name (latch.types.directory.IterdirChild attribute) (latch.types.metadata.LatchAuthor attribute) (latch.types.metadata.MultiselectOption attribute) (latch.types.metadata.SnakemakeMetadata attribute) (latch.verified.rnaseq.Sample attribute) (latch_cli.services.cp.utils.Child attribute) (latch_cli.services.workspace.WSInfo attribute) nextera (latch.verified.trim_galore.AdapterSequence attribute) no_standard_bulk_execution (latch.types.metadata.LatchMetadata attribute) no_underline (latch_cli.click_utils.AnsiCodes attribute) node_name (latch.executions.TaskIdentifier attribute) NodeDescendantsDescendants (class in latch.types.directory) NodeDescendantsFinalLinkTarget (class in latch.types.directory) NodeDescendantsLDataResolvePathData (class in latch.types.directory) NodeDescendantsNode (class in latch.types.directory) nodes (latch.types.directory.IterdirChildLdataTreeEdges attribute) (latch.types.directory.NodeDescendantsDescendants attribute) (latch_cli.services.cp.utils.ChildLdataTreeEdges attribute) (latch_cli.services.cp.utils.LdataS3MountAccessProvensByGeneratedUsing attribute) (latch_cli.services.cp.utils.LdataS3MountConfiguratorRolesByAccountId attribute) (latch_cli.services.cp.utils.TeamInfosByOwnerId attribute) (latch_cli.services.cp.utils.TeamMembersByUserId attribute) normalize_path() (in module latch_cli.utils.path) NoSuchColumnError O OAuth2 (class in latch_cli.auth.oauth2) OAuth2Constants (class in latch_cli.constants) opencl (latch_cli.workflow_config.BaseImageOptions attribute) options (latch.types.metadata.Multiselect attribute) order (latch_cli.docker_utils.DockerCmdBlock attribute) outer_join() (in module latch.functions.operators) output (latch.types.metadata.LatchParameter attribute) output_dir (latch.types.metadata.SnakemakeMetadata attribute) P paired (latch.verified.rnaseq.ReadType attribute) PairedEndReads (class in latch.verified.rnaseq) paragraph (latch.types.metadata.LatchAppearanceEnum attribute) parameters (latch.types.metadata.LatchMetadata attribute) (latch.types.metadata.SnakemakeMetadata attribute) Params (class in latch.types.metadata) params (latch.types.metadata.Params attribute) patch() (in module latch_cli.click_utils) path (latch.types.metadata.SnakemakeFileMetadata attribute) (latch.types.metadata.SnakemakeFileParameter attribute) phred33 (latch.verified.trim_galore.BaseQualityEncoding attribute) phred64 (latch.verified.trim_galore.BaseQualityEncoding attribute) PKCE (class in latch_cli.auth.pkce) pkg_config (latch_cli.constants.LatchConstants attribute) pkg_name (latch_cli.constants.LatchConstants attribute) placeholder (latch.types.metadata.LatchParameter attribute) post() (in module latch_cli.tinyrequests) postcopy (latch_cli.docker_utils.DockerCmdBlockOrder attribute) precopy (latch_cli.docker_utils.DockerCmdBlockOrder attribute) preview() (in module latch_cli.services.preview) primitive (latch.registry.upstream_types.types.PrimitiveTypeBasic attribute) (latch.registry.upstream_types.types.PrimitiveTypeEnum attribute) (latch.registry.upstream_types.types.PrimitiveTypeLink attribute) PrimitiveBlobValueValid (class in latch.registry.upstream_types.values) PrimitiveBooleanValueValid (class in latch.registry.upstream_types.values) PrimitiveEnumValueValid (class in latch.registry.upstream_types.values) PrimitiveLinkValueValid (class in latch.registry.upstream_types.values) PrimitiveNullValueValid (class in latch.registry.upstream_types.values) PrimitiveNumberValueValid (class in latch.registry.upstream_types.values) PrimitiveStringValueValid (class in latch.registry.upstream_types.values) PrimitiveTypeBasic (class in latch.registry.upstream_types.types) PrimitiveTypeEnum (class in latch.registry.upstream_types.types) PrimitiveTypeLink (class in latch.registry.upstream_types.types) print_and_write_build_logs() (in module latch_cli.services.register.register) print_serialize_logs() (in module latch_cli.services.register.register) print_upload_logs() (in module latch_cli.services.register.register) private_key (latch_cli.utils.TemporarySSHCredentials property) Project (class in latch.registry.project) project (latch.registry.project.ProjectUpdate attribute) ProjectUpdate (class in latch.registry.project) public_key (latch_cli.utils.TemporarySSHCredentials property) put() (in module latch_cli.tinyrequests) R r1 (latch.verified.rnaseq.PairedEndReads attribute) (latch.verified.rnaseq.SingleEndReads attribute) r2 (latch.verified.rnaseq.PairedEndReads attribute) raise_for_status() (latch_cli.tinyrequests.TinyResponse method) raw_value (latch.registry.types.InvalidValue attribute) rawValue (latch.registry.upstream_types.values.InvalidValue attribute) read_bytes() (in module latch_cli.menus) read_next_byte() (in module latch_cli.menus) ReadType (class in latch.verified.rnaseq) Record (class in latch.registry.record) redirect_url (latch_cli.constants.OAuth2Constants attribute) RefSeq_GRCm39 (latch.verified.rnaseq.LatchGenome attribute) RefSeq_hg38_p14 (latch.verified.rnaseq.LatchGenome attribute) RefSeq_R64 (latch.verified.rnaseq.LatchGenome attribute) RefSeq_T2T_CHM13v2_0 (latch.verified.rnaseq.LatchGenome attribute) regex (latch.types.metadata.LatchRule attribute) register() (in module latch_cli.services.register.register) register_serialized_pkg() (in module latch_cli.services.register.utils) RegistryEnumDefinition (class in latch.registry.types) RegistryTransformerException relPath (latch.types.directory.NodeDescendantsNode attribute) remote_complete() (in module latch_cli.services.cp.autocomplete) remote_path (latch.types.directory.LatchDir property) (latch.types.file.LatchFile property) RemoteConnInfo (class in latch_cli.centromere.utils) remove() (in module latch_cli.services.test_data.remove) remove_cursor() (in module latch_cli.menus) rename_current_execution() (in module latch.executions) replicates (latch.verified.rnaseq.Sample attribute) repository (latch.types.metadata.LatchMetadata attribute) request() (in module latch_cli.tinyrequests) requires_login() (in module latch_cli.main) reset_bold (latch_cli.click_utils.AnsiCodes attribute) reset_color (latch_cli.click_utils.AnsiCodes attribute) retry (latch.executions.TaskIdentifier attribute) reveal_cursor() (in module latch_cli.menus) right_join() (in module latch.functions.operators) rsync() (in module latch_cli.services.local_dev) rules (latch.types.metadata.LatchParameter attribute) S salmon (latch.verified.rnaseq.AlignmentTools attribute) Sample (class in latch.verified.rnaseq) sampleId (latch.registry.upstream_types.values.LinkValue attribute) samplesheet (latch.types.metadata.LatchParameter attribute) schema() (latch.verified.rnaseq.PairedEndReads class method) (latch.verified.rnaseq.Sample class method) (latch.verified.rnaseq.SingleEndReads class method) secret_name (latch.types.metadata.DockerMetadata attribute) Section (class in latch.types.metadata) section (latch.types.metadata.Section attribute) section_title (latch.types.metadata.LatchParameter attribute) select_tui() (in module latch_cli.menus) SelectOption (class in latch_cli.menus) serialize_pkg_in_container() (in module latch_cli.services.register.utils) single (latch.verified.rnaseq.ReadType attribute) SingleEndReads (class in latch.verified.rnaseq) size() (latch.types.file.LatchFile method) size_recursive() (latch.types.directory.LatchDir method) small_gpu_task (latch_cli.services.local_dev.TaskSize attribute) small_gpu_task() (in module latch.resources.tasks) small_rna (latch.verified.trim_galore.AdapterSequence attribute) small_task (latch_cli.services.local_dev.TaskSize attribute) small_task() (in module latch.resources.tasks) snakemake (latch_cli.utils.WorkflowType attribute) SnakemakeFileMetadata (class in latch.types.metadata) SnakemakeFileParameter (class in latch.types.metadata) SnakemakeMetadata (class in latch.types.metadata) SnakemakeParameter (class in latch.types.metadata) Spoiler (class in latch.types.metadata) spoiler (latch.types.metadata.Spoiler attribute) ssh_key_path (latch_cli.centromere.utils.RemoteConnInfo attribute) star_salmon (latch.verified.rnaseq.AlignmentTools attribute) status_code (latch_cli.tinyrequests.TinyResponse property) stop_pod() (in module latch_cli.services.stop_pod) stranded_illumina (latch.verified.trim_galore.AdapterSequence attribute) Strandedness (class in latch.verified.rnaseq) strandedness (latch.verified.rnaseq.Sample attribute) stream (latch_cli.services.register.utils.DockerBuildLogItem attribute) strip_domain() (in module latch_cli.utils.path) sub_from_jwt() (in module latch_cli.utils) sync() (in module latch_cli.services.sync) sync_rec() (in module latch_cli.services.sync) T Table (class in latch.registry.table) table (latch.registry.table.TableUpdate attribute) TableUpdate (class in latch.registry.table) tag (latch.registry.upstream_types.values.UnionValue attribute) tags (latch.types.metadata.LatchMetadata attribute) TaskIdentifier (class in latch.executions) TaskSize (class in latch_cli.services.local_dev) TB (latch_cli.constants.Units attribute) Team (class in latch_cli.services.cp.utils) team (latch_cli.services.cp.utils.TeamMembersByUserIdNode attribute) TeamInfosByOwnerId (class in latch_cli.services.cp.utils) teamInfosByOwnerId (latch_cli.services.cp.utils.UserInfoByAccountId attribute) TeamMembersByUserId (class in latch_cli.services.cp.utils) teamMembersByUserId (latch_cli.services.cp.utils.UserInfoByAccountId attribute) TeamMembersByUserIdNode (class in latch_cli.services.cp.utils) TemporarySSHCredentials (class in latch_cli.utils) Text (class in latch.types.metadata) text (latch.types.metadata.Text attribute) TiB (latch_cli.constants.Units attribute) TinyResponse (class in latch_cli.tinyrequests) Title (class in latch.types.metadata) title (latch.types.metadata.Title attribute) to_dict() (latch.verified.rnaseq.PairedEndReads method) (latch.verified.rnaseq.Sample method) (latch.verified.rnaseq.SingleEndReads method) to_json() (latch.verified.rnaseq.PairedEndReads method) (latch.verified.rnaseq.Sample method) (latch.verified.rnaseq.SingleEndReads method) to_python_literal() (in module latch.registry.utils) to_python_type() (in module latch.registry.utils) to_python_value() (latch.types.directory.LatchDirPathTransformer method) (latch.types.file.LatchFilePathTransformer method) to_registry_literal() (in module latch.registry.utils) token (latch.executions.TaskIdentifier attribute) type (latch.registry.types.Column attribute) (latch.registry.upstream_types.types.DBType attribute) (latch.types.directory.IterdirChild attribute) (latch.types.metadata.SnakemakeFileParameter attribute) (latch.types.metadata.SnakemakeParameter attribute) U underline (latch_cli.click_utils.AnsiCodes attribute) underline() (in module latch_cli.click_utils) union (latch.registry.upstream_types.types.UnionType attribute) UnionType (class in latch.registry.upstream_types.types) UnionValue (class in latch.registry.upstream_types.values) Units (class in latch_cli.constants) units (in module latch_cli.constants) update() (latch.account.Account method) (latch.registry.project.Project method) (latch.registry.table.Table method) upload() (in module latch_cli.services.test_data.upload) upload_file() (in module latch_cli.services.sync) (in module latch_cli.services.test_data.upload) upload_helper() (in module latch_cli.services.test_data.upload) upload_image() (in module latch_cli.services.register.utils) upsert_column() (latch.registry.table.TableUpdate method) upsert_record() (latch.registry.table.TableUpdate method) upsert_record_raw_unsafe() (latch.registry.table.TableUpdate method) upsert_registry_project() (latch.account.AccountUpdate method) upsert_table() (latch.registry.project.ProjectUpdate method) upstream_type (latch.registry.types.Column attribute) url (latch_cli.tinyrequests.TinyResponse property) url_end (latch_cli.click_utils.AnsiCodes attribute) url_href (latch_cli.click_utils.AnsiCodes attribute) url_name (latch_cli.click_utils.AnsiCodes attribute) urljoins() (in module latch_cli.utils) use_conda (latch.types.metadata.EnvironmentConfig attribute) use_container (latch.types.metadata.EnvironmentConfig attribute) UserInfoByAccountId (class in latch_cli.services.cp.utils) userInfoByAccountId (latch_cli.services.cp.utils.AccountInfoCurrent attribute) username (latch.types.metadata.DockerMetadata attribute) (latch_cli.centromere.utils.RemoteConnInfo attribute) V valid (latch.registry.upstream_types.values.InvalidValue attribute) (latch.registry.upstream_types.values.PrimitiveBlobValueValid attribute) (latch.registry.upstream_types.values.PrimitiveBooleanValueValid attribute) (latch.registry.upstream_types.values.PrimitiveEnumValueValid attribute) (latch.registry.upstream_types.values.PrimitiveLinkValueValid attribute) (latch.registry.upstream_types.values.PrimitiveNullValueValid attribute) (latch.registry.upstream_types.values.PrimitiveNumberValueValid attribute) (latch.registry.upstream_types.values.PrimitiveStringValueValid attribute) validate() (latch.types.metadata.SnakemakeMetadata method) value (latch.registry.upstream_types.values.PrimitiveBlobValueValid attribute) (latch.registry.upstream_types.values.PrimitiveBooleanValueValid attribute) (latch.registry.upstream_types.values.PrimitiveEnumValueValid attribute) (latch.registry.upstream_types.values.PrimitiveLinkValueValid attribute) (latch.registry.upstream_types.values.PrimitiveNullValueValid attribute) (latch.registry.upstream_types.values.PrimitiveNumberValueValid attribute) (latch.registry.upstream_types.values.PrimitiveStringValueValid attribute) (latch.registry.upstream_types.values.UnionValue attribute) (latch.types.metadata.MultiselectOption attribute) (latch_cli.menus.SelectOption attribute) video_tutorial (latch.types.metadata.LatchMetadata attribute) W wiki_url (latch.types.metadata.LatchMetadata attribute) with_si_suffix() (in module latch_cli.utils) workflow() (in module latch.resources.workflow) workflow_reference() (in module latch.resources.reference_workflow) WorkflowType (class in latch_cli.utils) workspace() (in module latch_cli.services.workspace) workspace_id (latch_cli.services.workspace.WSInfo attribute) write_block() (latch_cli.docker_utils.DockerCmdBlock method) write_dl() (latch_cli.click_utils.ColoredHelpFormatter method) write_heading() (latch_cli.click_utils.ColoredHelpFormatter method) write_usage() (latch_cli.click_utils.ColoredHelpFormatter method) WSInfo (class in latch_cli.services.workspace)